modules/snpsift_split

Splits/Joins VCF(s) file into chromosomes

splitjoinvcf

https://github.com/nf-core/modules/[...]/modules/nf-core/snpsift/split

Description

Splits/Joins VCF(s) file into chromosomes

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`vcf`
`:file`

VCF file(s)

*.{vcf,vcf.gz}

Output

name:type

description

pattern

`out_vcfs`

`meta`
`:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`*.vcf`
`:file`

Split/Joined VCF file(s)

*.vcf

`versions_snpsift`

`${task.process}`
`:string`

The name of the process

`snpsift`
`:string`

The name of the tool

`SnpSift split -h 2>&1 | sed -n 's/.version $[^ ]$.*/\1/p;q'`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`snpsift`
`:string`

The name of the tool

`SnpSift split -h 2>&1 | sed -n 's/.version $[^ ]$.*/\1/p;q'`
`:eval`

The expression to obtain the version of the tool

Tools

snpsift
MIT

SnpSift is a toolbox that allows you to filter and manipulate annotated files

pcingola.github.io/SnpEff/ss_introduction https://github.com/pcingola/SnpEff 10.3389/fgene.2012.00035

modules/snpsift_split

Description

Input

`meta`
`:map`

`vcf`
`:file`

Output

`out_vcfs`

`meta`
`:map`

`*.vcf`
`:file`

`versions_snpsift`

`${task.process}`
`:string`

`snpsift`
`:string`

`SnpSift split -h 2>&1 | sed -n 's/.version \([^ ]\).*/\1/p;q'`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`snpsift`
`:string`

`SnpSift split -h 2>&1 | sed -n 's/.version \([^ ]\).*/\1/p;q'`
`:eval`

Tools

snpsift
MIT

included in

maintainers

get in touch

modules/snpsift_split

Description

Input

meta:map

vcf:file

Output

out_vcfs

meta:map

*.vcf:file

versions_snpsift

${task.process}:string

snpsift:string

SnpSift split -h 2>&1 | sed -n 's/.*version \([^ ]*\).*/\1/p;q':eval

Topics

versions

${task.process}:string

snpsift:string

SnpSift split -h 2>&1 | sed -n 's/.*version \([^ ]*\).*/\1/p;q':eval

Tools

snpsift MIT

included in

maintainers

get in touch

`meta`
`:map`

`vcf`
`:file`

`out_vcfs`

`meta`
`:map`

`*.vcf`
`:file`

`versions_snpsift`

`${task.process}`
`:string`

`snpsift`
`:string`

`SnpSift split -h 2>&1 | sed -n 's/.version \([^ ]\).*/\1/p;q'`
`:eval`

`versions`

`${task.process}`
`:string`

`snpsift`
`:string`

`SnpSift split -h 2>&1 | sed -n 's/.version \([^ ]\).*/\1/p;q'`
`:eval`

snpsift
MIT